Merge branch 'master' into gh-pages
Merge branch 'master' into gh-pages
Merge branch 'master' into gh-pages
move things around, change package names
ignore jars
remove target
add logging
initial try of args4j
add some command line parameters
more args
some more arguments
clean up some code
debugging
better default values
move things around
make id optional
oops
add parameters for vcfstats
modify website
Merge pull request #2 from bioinform/fix-command-line

Fix command line