cpp: test: Set BIOFORMATS_SCHEMADIR when running tests
cpp: ome-xml: Automatically register schema catalogues
cmake: Generate wrapper to run programs in the build tree
Remove source links hyperlinks from Java source files

URLs were mostly used to create links to the source code from the Javadocs.
However, it is hard to maintain across the board. Furthermoe it links to a
branch rather than a tag.
Merge pull request #1444 from snoopycrimecop/develop/latest/autogen

Update auto-generated documentation
Merge pull request #1441 from melissalinkert/ome-xml-fix

Fix OME-XML BinData decoding
merge develop -Dorg -Ssuccess-only: PR 1407 (TIFF: fix plane count calculation for pyramids with multiple planes)
merge develop -Dorg -Ssuccess-only: PR 1420 (Updating samples and adding units samples)
merge develop -Dorg -Ssuccess-only: PR 1435 (Ordered MapPairs implementation)
merge develop -Dorg -Ssuccess-only: PR 1442 (Update roi handler)
merge develop -Dorg -Ssuccess-only: PR 1448 (Metamorph: allow both sanitized and unsanitized delimiters)
merge develop -Dorg -Ssuccess-only: PR 1452 (Use __import__ for generateDS to handle FS case issues)
merge develop -Dorg -Ssuccess-only: PR 1453 (Fix mock object to match changes from int to double for channel)
merge develop -Dorg -Ssuccess-only: PR 1454 (C++: Autoload schema catalogues and set up environment for tests)
merge develop -Dorg -Ssuccess-only: PR 1455 (Remove source code hyperlinks from Java source files)
merge develop -Dorg -Ssuccess-only

Repository: openmicroscopy/bioformats
Excluded PRs:
  # PR 1437 stelfrich 'Changed handling of empty series names in ND2 files' (user: stelfrich)
  # PR 1381 melissalinkert 'Parse physical pixel sizes from CellSens .vsi datasets' (label: exclude)
  # PR 1366 ctrueden 'Miscellaneous cleanup' (label: exclude)
  # PR 1177 rleigh-dundee 'specification: Add metadata for HDF5 embedding' (exclude comment)
  # PR 857 melissalinkert 'Initial support for Zeiss .lms files' (label: exclude)
  # PR 858 melissalinkert 'Initial support for Veeco AFM data' (label: exclude)
  # PR 1426 qidane 'Initial Rendering Definitions schema' (exclude comment)
  # PR 1443 joshmoore 'Genshi ZIP' (label: exclude)
  # PR 1365 ctrueden 'PrairieView 5.2 fixes and improvements' (label: exclude)
  # PR 1161 sommerc 'Initial CellH5 Reader class' (user: sommerc)
  # PR 1015 qidane 'Messy binary' (exclude comment)
  # PR 1309 melissalinkert 'Allow tile-based access of large JPEG-2000 images' (exclude comment)
Updating e7ddc61..487a3c1
Previously merged:
  # PR 1441 melissalinkert 'Fix OME-XML BinData decoding'
  # PR 1444 snoopycrimecop 'Update auto-generated documentation'
  # PR 1431 rleigh-dundee 'Specification: Add XML catalogues for released schemas'
  # PR 1450 melissalinkert 'Reduce memory needed to open PNG images'

Merged PRs:
  # PR 1407 melissalinkert 'TIFF: fix plane count calculation for pyramids with multiple planes'
  # PR 1420 qidane 'Updating samples and adding units samples'
  # PR 1435 joshmoore 'Ordered MapPairs implementation'
  # PR 1442 bramalingam 'Update roi handler'
  # PR 1448 melissalinkert 'Metamorph: allow both sanitized and unsanitized delimiters'
  # PR 1452 joshmoore 'Use __import__ for generateDS to handle FS case issues'
  # PR 1453 jburel 'Fix mock object to match changes from int to double for channel'
  # PR 1454 rleigh-dundee 'C++: Autoload schema catalogues and set up environment for tests'
  # PR 1455 sbesson 'Remove source code hyperlinks from Java source files'

Generated by OME-5.1-merge-push#622 (http://ci.openmicroscopy.org/job/OME-5.1-merge-push/622/)