New classes that will be related to VariantEffect
New VariantEffect beans filled with constructors, getters and setters
Biodata tools adapted to new VariantEffect classes
Included all members of classes related to VariantEffect
Initialization of ConsequenceType numerical attributes to -1
Utilities for retrieving INFO and samples column given Biodata entities
Fixed VariantcontrolAnnotator
Merge branch 'develop' of github.com:opencb/biodata into develop
Improved coherence among VariantStats constructors. New equals and hashCode methods implemented
MAF allele and MGF genotype added to Protobuf representation of VariantStats
equals and hashCode methods added to VariantSource and VariantGlobalStats
Removed attribute ArchivedVariantFile.fileName (not really used)
Merging branch 'develop' into 'feature/consequence-type'
VariantEffect renamed to VariantAnnotation, ConsequenceType renamed to VariantEffect, new class Gene
Set of genes added to VariantAnnotation
Added opencb.datastore to pom.xml
The VariantGeneAnnotator retrieves data from Cellbase instead of Variant Effect'
Fixed bug in VariantGeneAnnotator
models: core, pathway, protein and variation models from Cellbase have been added
models: Old GenomicVariantEffectPredictor class removed
formats: UniprotParser added