Added different ways to extract sequence
Merging with main branch
Merge branch 'master' of https://github.com/mgarber/scriptureV2
Merged with main branch
Merge branch 'master' of https://github.com/mgarber/scriptureV2
Merge branch 'master' of https://github.com/mgarber/scriptureV2
Merge branch 'master' of https://github.com/mgarber/scriptureV2
Merge branch 'master' of https://github.com/mgarber/scriptureV2
Merge branch 'master' of https://github.com/mgarber/scriptureV2
added two little routines
Merge branch 'master' of https://github.com/mgarber/scriptureV2

Conflicts:
	lib/.DS_Store
Merge branch 'master' of https://github.com/mgarber/scriptureV2
Merging ok
Merge branch 'master' of https://github.com/mgarber/scriptureV2
Merge branch 'master' of https://github.com/mgarber/scriptureV2
Program to extract regions from fasta file with option of masking other
regions
Minor change to command line menu
Latest functionality for 3D barcode code
Merge branch 'master' of https://github.com/mgarber/scriptureV2
Delete .classpath

This file should not be commited.
Berkeley db updates
Merge branch 'master' of https://github.com/mgarber/scriptureV2.git
Minor change and new berkeley db code