update not sure what all changed too long ago that I worked on this...
clean_ngs updates, + initial update
index on master: 5e43468 clean_ngs updates, + initial update
WIP on master: 5e43468 clean_ngs updates, + initial update
Merge https://github.com/baj12/seqan_apps
Version 0.18 based on problem in underlying libraries (problem with reading comments from sam file)