Removed a few ignore annotations, fixed a few bits
Fix to failing-to-fail and failing-to-detect-fail-to-fail  test case.

Utf8TestCase::testInvalidUTF8roundTrip has two errors.

1) String::getBytes is called with no arguments, which uses the default
charset encoder to generate an octet stream.
   With a default charset of UTF-8, this results in a valid UTF-8 octet
stream.
   Unfix lack of error by bytes as ISO_8859_1.

 2) The call to loadOntologyFromOntologyDocument was succeeding on the
valid UTF-8 stream, and hitting
 the fail statement.  Unfortunately, the catch block was catching
Throwable, rather than Exception.  Since Throwable is a superclass of
the AssertionError thrown by fail, the call to fail to indicate a
failure to fail was getting caught as if the method had successfully
failed. (Prime Minister).

 With these changes in place, the bad octet in the UTF-8 stream is
detected and an  exception  is thrown.