Remove unnecassary files
Merge branch 'master' of /clients1/alireza/Projects/repos/../Gmml/Dev/gmml-refactoring
Merge branch 'master' of /clients1/alireza/Projects/repos/../Gmml/Dev/gmml-refactoring
Merge branch 'refactoring'
Merge branch 'remote' of /clients1/delaram/Projects/gems/gmml
Merge branch 'refactoring'
Merge branch 'master' of /clients1/alireza/Projects/repos/../Gmml/Dev/gmml-refactoring
Merge branch 'refactoring' of /clients1/alireza/Projects/repos/../Gmml/Dev/gmml-refactoring into remote
Merge branch 'refactoring'
Merge branch 'master' of /clients1/alireza/Projects/repos/../Gmml/Dev/gmml-refactoring
Merge branch 'refactoring' of /clients1/alireza/Projects/repos/../Gmml/Dev/gmml-refactoring into remote
Merge branch 'remote' of /clients1/delaram/Projects/gems/gmml into remote

Conflicts:
	src/MolecularModeling/assembly.cc
Merge branch 'refactoring'
exception handling for existing file, removing HIS residues from unrecognized residues
Histidine residues preprocessing in pdb has been modified
Exception handling for reading pdb file
Merge branch 'remote' of /clients1/delaram/Projects/gems/gmml into refactoring

Conflicts:
	src/FileSet/PdbFileSpace/pdbfile.cc
	src/Resolver/PdbPreprocessor/pdbpreprocessor.cc
Merge branch 'refactoring' of /clients1/alireza/Projects/repos/../Gmml/Dev/gmml-refactoring into remote
Merge branch 'remote' of /clients1/delaram/Projects/gems/gmml into remote

Conflicts:
	src/FileSet/PdbFileSpace/pdbfile.cc
	src/Resolver/PdbPreprocessor/pdbpreprocessor.cc
Error fix
Merge branch 'refactoring'