Updates to Version 8

<suffix>Jnr</suffix>Added more affiliations per authorAdded ORCIDAdded conf2 to all authors without a conflict, to correspond with footnote:Updated Renee K given name to include full middle name (Renee Kathryn )as we allow both initials and full middle namesThe remaining authors declare that no competing interest existUpdated wording of above footnoteAdded further present address – same present address for two authors, not labeled as C as info regarding authors should be enoughAdded deceased author taggingAdded on behalf of tagging – note, should be allowed within author list as well as at end Added subdivision of tagging for author non-byline so can distinguish which authors below to which group author (gal1 and gal2)Added editor IDDeleted “For correspondence label”Updated initials in for correspondence line – removed full stops between initialsUpdated references to UK and US to United Kingdom and United StatesAccidently deleted elocation id – reinstated in final versionRemoved © and replaced with (c) Changed ms number of crosslinked InsightMoved Math ML out of the abstract and into main textAddede relevant italics tagging to author keywordAdded Research organism that required italic and added italic taggingChanged funders and added funding source IDsUpdated funding statement to reflect multiple funders – Clarify whether EJP do this on output or TNQ during reeditingUpdated elife-xml-version to 0.8Updated editorial display for Figures (Figure 1-figure supplement 1)Removed incorrect tagging  re media mim-subtype Updated bold usage in figure legends – used for (A), (B) etc only, not to differentiate different parts (title/legend etc)Updated reference citation to a collaborator and added collaborator the bib taggingUpdated reviewing editor editorial details – added proper name and updated title of this roleUpdated reviewer editorial details – added proper nameAdded author ID to reviewerAdded full names to Author ContributionsUpdated boxed text for decision letterAdded a crosslinking reference to a figure in the response letterUpdated editorial text for title of response letterMoved placement of full stop to outside <italic> to prevent PMC removing italics from the paraAdded new figure into the response letter – generate fileAdded table to response letterAdded coloured html tagging:<p> Here is an example of making text display in different colours: <named-content content-type="author-callout-style1">red</named-content>, <named-content content-type="author-callout-style2">blue</named-content>, <named-content content-type="author-callout-style3">green</named-content>, and <named-content content-type="author-callout-style4">yellow</named-content>.</p>Added inline graphic:<p> Here is an example of pulling in an inline graphic <inline-graphic xlink:href="elife00013ksinf001"/>.</p>Reinstated ©  confusion over what is in final xmlUpdated author notes to avoid unnecessary <label>*</label>For correspondence: repetition of Ensured that all special characters are properly represented by HTML entity numbers.Changed ‘id’ attribute of element <sub-article article-type="reply"…> to SA2. This fixed the issue of the author response in Article Commentary not being displayed in Lens.Corrected the spelling of the ‘deceased’ attribute in the root <contrib> element for the author Richard Zuzow.funder-id DOIs are now contained in the <named-content content-type="funder-id"> element within the <funding-source> element.Added <xref ref-type="fn" rid="equal-contrib2"> equal contribution group for Shugeng Cao and Renee Kathryn Dermenjian.Added <inline-formula> tags to and ‘id’ attribute to <mml:math> in-text the MML. This now displays.Dataset tagging and <x> changed slightly – any punctuation after author name not contained in <x> but other items are. This is for display on HW site – onlu display content not in <x>, but display on P<C will also look nice.Still not done:TNQ did not add Chem ml as they have no samples for eLifeUpdates in final version TNQ delivered Jan 20131. Thanks for spotting that, please do remove <xref ref-type="fn" rid="conf2"/> from Jon Clardy TNQ: We have done as advised. 2. As major data sets have their own <sec sec-type="datasets"> I think we assumed they'd need to have a new section, so can their section be contained within the parent section of <sec id="sec23" sec-type="supplementary-material"> and there would be two closed </sec> tags after the datasets? TNQ: Yes, we can capture this datasets within the supplementary-material section as advised. 3. query regarding the present address. Please make your suggested change to the Kitchen sink xml and return it to me - I will re-send this version to HW for testing and highlight that as a potential change and see what happens at their end. TNQ: Yes, we had made our suggested change to the present address in the attached Kitchen-sink xml for testing in HW. Also, we had delivered a separate sample xml file for testing in this regard. 4. entities - we removed all the normal text and replaced with entities, based on reviewing the content in Lens. However, it has become clear that as encoding="UTF-8"?is included it is explicit, and we don't need to add the actual HTML codes, and HW will display them anyway as provided (incorrect). I am really sorry, but can you change them all back to what you would send to HW? Is that easy to do? TNQ: We had made these changes in the attached kitchen-sink xml.