XD-1784 Access ModuleDeployment properties

- Add module deployment properties along with module metadata
  - In ZK module metadata repository, add deployment properties from
module deployment path along with module properties (options) from
module metadata path
   - Add find methods based on criteria
     - by containerId and moduleId
     - by moduleId
- Update REST endpoint to list modules by moduleId and containerId
with combinations of both
- Add tests for `ModulesMetadataController`
- Add Shell command option for `runtime modules` based on `moduleId`
- Add tests for `RuntimeCommands`

Address review comments

- Change `ModuleMetadata` moduleProperties -> moduleOptions
- Fix `ModuleMetadataRepository` accessor methods
  - Remove Pageable return type for accessor methods that don't need paging
  - Remove duplicate logic in ZK module metadata repository

Add Pagination and error handling support

Address review comments

- Remove `ModuleNotExistException` and use `oduleNotDeployedException` instead
- Fix exception handling and RestControllerAdvice

Minor refinements
Move inputType related test out of ReferenceDoc generation