setup files for pypi
added newline to end of file
version number will start from 0.0.1, instead of 0.1
added vbi vt email
ignore manifest generated from distutils
missed trailing comma
mann imports the agent, network, and  network_agent modules
rename 'import agent' to 'import mann.agent as agent'
delete comments
changed description
add english language classifiers
fill out licence,  scripts in package, and long description using README
import mann.MODULE format in __init__.py
comment out and re-write fxn for ex/out files to be parameters
when this package gets installed as a package the working directory
becomes the directory where the actual package is installed
we change the hard-coded directory calls so the function takes a
file directory as a parameter
LENS .in file for agent update
moved Rmd src files into R subdirectory
lens agent default states are 0, not None

None cases problems when trying to write out to a file.
will still need to discuss with Mark what a default state should be
added print statements for debugging

need to move into logging
run lens with no gui and working .in file
print cwd and files for debugging