Add to cal initialized 'sr_duplicate_list=NULL'
Includes adapter support in the fastq_read_t structure
Reverse complementary function moved from fastq_read, reverse string function added to string utils file and and array list replace function implemented
Merge branch 'develop-rna-sj' of https://github.com/opencb/hpg-libs into develop-adapters-mapq-merge-rna-sj
Resolves conflicts after merging the branch develop-adapters-mapq-merge-rna-sj-next-5
Add alig_data to alignment structure
nothing...