New test vcf with genotype fields
Created new test VCFs to play with
Better test vcfs; Better docs and CLI args
Hotfix for snpEff/VEP prerun checks
Hotfix VarScan VCFs that store Ref depth separately
In README, use static links to lines of code
Added maf2vcf helper script
Added maf2vcf helper script
Merge branch 'develop'
Add SO effect - exon_loss_variant
More user options; New test VCFs
Simplify test VCFs a bit
Handle multi-caller merged VCFs
Handle non-digit values in FORMAT:AD
Handle new variant types; Avoid re-annotation
Suggest tabix indexing of VEP cache
Support snpEff's fixed typo
Add .txt that describes all MAF columns
Added intergenic_region for handling snpeff output.
Merge branch 'master' of github.com:kdaily/vcf2maf