Fixed typo on MAVEN_OPTS quotation mark
Merge pull request #471 from neurons/fix_readme

Fixed typo on MAVEN_OPTS quotation mark
Consolidate documentation into a single location in source.

This system uses `pandoc` to convert Markdown into PDF and HTML
for each release. These currents docs were taken from our Wiki
and README.
Merge pull request #474 from massie/docs

Consolidate documentation into a single location in source.
[ADAM-462] Coverage region calculation

Initial implementation of Coverage class.
Added a PairingRDD function.
Added the pairWithEnds() method.

Working on an implementation of the findCovergeRegions method that
doesn't return pairs of Regions which are adjacent (although disjoint)
to each other.