05-runner.sh cmd args for threads
runner now requires -j to pass the number of threatds to parallel to save percy and -P to balance -j option by increasing subread threads
05-subread positional argument from runner
script now get a positional argument for the runner specifying the number of threads that subread should use
05-subread wrong flag
05b-samtools split from subread script
more  args
subread or subjunc now arg
lots more args
alignment folder arg
subread -C -P flags added again
featureCounts *.bam fixed
07-usage error fixed
06-usage error fixed
07 sRNA for SE
07 sRNA for SE fix
01-runner.sh mkdir -p flag
01-runner.sh faulty -p removed
05-subread.sh -u -H added
Merge branch 'master' of github.com:pedrocrisp/NGS-pipelines