Added file to test plotting functions
Added partial testing for plots
changes bellow
Added the plot.rates.time funtion to ready_functions
minor change to plot.rates.time
removed emacs backup files
checked off plot.rate.time function from the readme.md file
added tdep generic with new name
Added testing for genetic tdep rates
fixed plotting rates through time plotting function
tested generic rates function
Modifications for heterochronous trees, including plotting, get.rates.time, and the time dependent rate simulations
teting t dep generic. Note that this function integrages over the node ages
Added the plotting function for regrgession and the R package skeleton
Checking plot.clock and package skeleton
updates readme
remove package skeleton. We still need a function to simulate rates with any of the models
Created package skeleton
Created wrapper function for simulation of rates
Created class "ratesim" and "tree.data.matrix"
updated DESCRIPTION file
remove emacs backup files
added white noise and repackaged