Add ignore.stdout option to run_ss3model()
Move badly placed bracket
Add documentation for ignore.stdout argument
Update vignette to reflect ignore.stdout option
Add ... argument passing to system command
changed the effect of user_rec_devs

At the moment, when the user_rec_devs was called, this matrix was still multiplied with the sigma_r function --> hence the actual rec_devs that was used was not what we thought....

I removed the multiplier with sigma_r and now it is really the user_rec_devs that we use
Add expand_scenarios function
Merge branch 'master' of github.com:seananderson/ss3sim
Remove space from beginning of agecomp101-cod.txt filename
Re-arrange cases to be alphabetical
Update vignette to include expand_scenarios
Update and rename get-results.r to get_results.r

Let user specify a vector of scenarios instead of getting all. Useful if you want to overwrite only certain scenarios. Used mostly for testing.
Rename get_results.r to get-results.r

DIdn't like me renaming to get_results so I put it back.
Update and rename get-results.r to get_results.r

Was a different issue, so renamed. Added @param tag for the new argument.
Update DESCRIPTION

changed get-results.r to get_results.r in COLLATE section
Fix get-results filename and collate field
Re-oxygenize
Switch from MCMCpack to gtools for rdirichlet

Both packages use exactly the same code for this simple function but
gtools is a much smaller package and compiles easily on Unix machines
unlike MCMCpack.
Remove package install from get_results_all help
Re-run makefile to create README.md