implemented netmhcpans parse_external_results (for 2.4)
changed Interface of external methods and added error handling for external call
Implemented MHCIIMulti
simple UnitTest for MHCIIMulti
overwritten __cmp__ to get rid of annoying Bio.Seq FutureWarning
fixed a bug in parse_external_result in netmhcpan
changed static lists into frozensets
fixed some bugs in ANetMHC
implemented NetMHCIIpan
implemented NetMHCII (hat to changed ANetMHCs pep-list generation for that -.-)
implemented NetMHCII (hat to changed ANetMHCs pep-list generation for that -.-)
implemented NetMHCII (hat to changed ANetMHCs pep-list generation for that -.-)
changed EpitopeAssembly to be more broadly applicable
implemented netChop
made instance acessable
fixed galaxy html output for EpitopeAssembly
Added advanced assembly, minimizing cleavage prob within epitopes as well as maximizing cleave prob between peptides
Implemented iVac generator and checks for invalid variants
Added Importin of NetChop to CleavagePrediction init
Changed error output of NetChop
Changed output filtering of external tool