fixup! Apache Commons Math 3.2, Imglib2 Gaussian fitting

Signed-off-by: Luke Stuyvenberg <stuyvenberg@wisc.edu>
fixup! mmstudio: Various improvements to mmstudio

Signed-off-by: Luke Stuyvenberg <stuyvenberg@wisc.edu>
Old build scripts: limited 64-bit support

I'm not sure how useful it is at this stage, but there's probably not
going to be much more work on these scripts; there are some new ones on
the way.

Signed-off-by: Luke Stuyvenberg <stuyvenberg@wisc.edu>
Vanilla MM Compat: Don't use logException

This method was added by an extremely early commit; as far as I can tell,
it is redundant with logError. The latter is a canonical part of MM; the
former is not. (Although, logException is rather more concise -- we may
consider submitting the patch to MM.)

Signed-off-by: Luke Stuyvenberg <stuyvenberg@wisc.edu>
Imglib2 version change

The 'release' version of Imglib2 changed at some point; with it, one call
used by the auto-calibrator is no longer correct.

I've altered the POM to just use the latest version of imglib2; I would
rather fix errors that arise from an evolving API than cling to an old
version. (Oh, yeah, and I also fixed the method call.)

Signed-off-by: Luke Stuyvenberg <stuyvenberg@wisc.edu>
WIP: New build scripts

With the paradigm for building changing away from compiling MM ourselves
(phew), I've started work on these new build scripts.

build-do-setup.sh is the successor to the transient setup.sh; this fetches
an MM nightly build installer and installs it.

build-ant.sh and build-maven.sh use maven or ant (guess which uses which!)
to build SPIMAcquisition. Maven is the default.

build-fragments.sh is a function library; pay no attention to the script
behind the curtain.

build-new.sh is the main script; it uses the others to compile a
(hopefully) working version of MicroManager + Fiji + SPIMAcquisition.

Signed-off-by: Luke Stuyvenberg <stuyvenberg@wisc.edu>