Adding zeroing of very small values in gauge output
Fixing loop bounds
Merge pull request #97 from gradylemoine/gauge-limit

Adding zeroing of very small values in gauge output
set GIT_STATUS in run_tests.py
fixed calling sequences in calls to setaux in prefilp and preicall
Merge pull request #98 from rjleveque/setaux_calls

Setaux calls  in prefilp and preicall
first merge, not yet working
Makefile with debugging options
bug from merge and from relacing rect[] temps with ilo,ihi,jlo,jhi
with fflags
cleaned up, removed the array temporaries
change calling seq for setaux in filpatch for 0 ghost cells
part of big filval reorg
new stuff working on bowl-slosh
implemented copying of aux arrays. cleaned up some code. added more timers
renamed the flag used in copying aux info from rinfinity to NEEDS_TO_BE_SET
changes to reduce round off error, minor edits
changed back to old way of basing initial refinement on old vals not newest vals so looks symemtric in first fine grids. done to agree with old nosetests
set bcs on coarse grid from filval
forgot to declare new var in parallel section; cleaning up compile warnings