clearsilver: update from 0.10.3 to 0.10.5
ettercap: update from 0.8.0 to 0.8.1 and adopt it
yodl: update from 3.03.0 to 3.04.00
checkstyle: update from 6.0 to 6.1
calibre: update from 2.9.0 to 2.10.0
dmd: fix 32-bit build and some nitpicks

CC #4976.
haskell-purescript: re-generate with cabal2nix
haskell-Agda: update to version 2.4.2.1
haskell-ReadArgs: update to version 1.2.2
haskell-conduit: update to version 1.2.3
haskell-cprng-aes: update to version 0.6.1
haskell-json: update to version 0.9
haskell-markdown: update to version 0.1.12
haskell-mwc-random: update to version 0.13.2.2
haskell-rest-gen: update to version 0.16.1.2
haskell-securemem: update to version 0.1.4
haskell-shakespeare: update to version 2.0.2.1
haskell-yesod-bin: update to version 1.4.0.7
haskell-cabal-db: update to version 0.1.11