Add a note about overwritewebroot when using system cron

If the current webroot is non-empty but the webroot from the config is,
and system cron is used, the URL generator fails to build valid URLs.
So we notify the admin to set it up correctly.

Fix #9995 

@DeepDiver1975 @PVince81  @MorrisJobke 

Related to #9494
<Th3FalleN> nickvergessen that link that Thomas commented on looks fine, no clue why i wasn't notified by github though...