Merge pull request #86 from SimonGoring/master

Ugh, can't figure out how to make these merge.
Updated some documentation. Now install_github should work fine
Merge branch 'master' of https://github.com/ropensci/neotoma

Conflicts:
	man/compile_list.Rd
Merge pull request #88 from SimonGoring/master

Added notice to the most recent version to identify the fact that backwa...
Merge pull request #89 from SimonGoring/master

Reinstated the plurals as deprecated functions.
Merge pull request #90 from SimonGoring/master

Changed get_site help and function to fix a bug and to return variables ...
Merge pull request #92 from SimonGoring/master

Removed the `siteid` variable from `get_site`, the API does not accept t...
Merge pull request #93 from SimonGoring/master

Added some new functions, changed the names of functions and fixed some bugs.
Merge pull request #94 from SimonGoring/master

Moved the columns of the output from `get_chroncontrol` around so that t...
Merge pull request #95 from SimonGoring/master

More style fixes.
Merge pull request #96 from SimonGoring/master

Emergency fix, some brackets were unpaired.
Merge pull request #5 from sosalla/master

Brought write_agefile and compile_taxa up to Google's R Style guide standards.
Merge remote-tracking branch 'upstream/master'
Merge pull request #99 from SimonGoring/master

Broadly formatting changes.  Minor help changes
document contributors in the CRAN-approved manner
Changed the 'clam' output columns.
Merge branch 'master' of https://github.com/SimonGoring/neotoma
A number of changes based on comments from package collaborators.

* Fixed typo in `get_contact` and added `length`  as `fun.aggregate` for the contacts so that a warning isn't thrown.  It doesn't do anything anyway.
* `get_dataset` was changed to provide a `Site` component that lines up with the one in `get_site`.
* `get_site` now allows a dataset to be passed so that a set of datasets can be converted easily into sites.  We should do the same for downloads if it's not already like that.
* `get_download` now accepts datasets and pulls out the DatasetID so that we don't have to do that annoying `lapply`/`sapply` thing anymore.
Rebuilt the package, updates to `Rd` files followed.  All based on the last commits.
Merge pull request #101 from SimonGoring/master

Changes associated with SimonGoring/neotoma_paper comments