fix faulty logic. only append orthologue param if organism names are different
fixes #390
fMerge branch 'dev' of github.com:intermine/intermine into dev
updated flyreg converter #387
Fixes #386
Fixed a bunch of tests.

Also added a test for the InterMineObject test case.
Fixes #386
Fixed a bunch of tests.

Also added a test for the InterMineObject test case.
Merge branch 'dev' of github.com:intermine/intermine into dev
Updated webservice client docs

For some reason this is in the repo. It probably shouldn't be.
Merge branch 'dev' into indexed-clob-access
updated redfly converter #387
Merge branch 'dev' of github.com:intermine/intermine into dev
add UberonTerm Refs #372
Added getListManager method.

In the future this should be more widely used as a mechanism for
easily getting lists.
Also let the user get the list-mapping

rather than forcing it to be rebuilt.
Let other classes get schema locations more easily.
Widened the type of addResultValue

This allows objects that participate in the CharSequence abstraction
to be passed in directly. This is particularly important for Clobs, but
other classes should be able to use this as well.
Added a service for returning subsequences
Bumped constant version