enhancement gatk recal '-rf BadCigar' to process even non-conform bams
bugfix: Sampleconfig gatkvariant batch; enhancement gatkVarcal also needed -rf BadCigar
bugfix GATK_VARBatch
bugfix gatkVarbatch
track hub support added
app note added
presentation
poster and conference abstracts
endnote library
always ignore endnote library stuff
cleanup after github
Fix merge conflict
trackhub generation tested
trackhubs refactored
trackhub link location refactored
bugifx trackhub link location
trackhub generation refactored
Merge branch 'trackhubs' of github.com:clark-lab/ngsane into trackhubs

Conflicts:
	core/makeTrackhubs.sh
peak calling refactored to integrate with track hubs
Compatibility for trackhubs