Merge pull request #1059 from rleigh-dundee/release-win-dev50

source-archive: Close in use files before removing them (rebased)
Merge pull request #998 from melissalinkert/micromanager

Micromanager fixes
merge dev_5_0 -D org: PR 1018 (Flex: fix support for new file naming scheme)
merge dev_5_0 -D org

Repository: openmicroscopy/bioformats
Excluded PRs:
  # PR 1045 imunro 'Changes to ensure pmtMarker is read correctly.' (label: exclude)
  # PR 1016 ctrueden 'Use pom-scijava as parent' (label: exclude)
Already up-to-date.

Merged PRs:
  # PR 1018 melissalinkert 'Flex: fix support for new file naming scheme'

Generated by BIOFORMATS-5.0-merge-daily#802 (http://ci.openmicroscopy.org/job/BIOFORMATS-5.0-merge-daily/802/)