Some added source, binaries, and data
2 samples were added. one with ~170 seqs (PIDs between 10 and 55), One with ~75 seqeunces between 56-96. May need to be redone with the full RFAM alignments, which are too big to download over 3G on the road. Maybe I will download them at Hungry Jacks and proceed.
added a qsub launcher for an array job
Merge branch 'master' of https://github.com/goranivanisevic/DotAligner
added clustering scripts
updated file descriptions
Merge branch 'master' of https://github.com/goranivanisevic/DotAligner
Added script to add random, dinucleotide controlled sequences to the ends of input sequences for benchmarking.
All output will have a fixed length, which should be longer than the longest input sequence.
Debugged
Merge branch 'master' of https://github.com/goranivanisevic/DotAligner