use one version of bam-rc
update clinseq blessed.

This build uses bam-readcount0.6 for the clonality step in ClinSeq.
We are transitioning to using just one bam-readcount version inside
ClinSeq and tracking that version in the processing-profile.
Use sanitize_string_for_filesystem to make model name safe for path.
a bug fix => to =;a little refactoring of params
improve the params construction, no overwrite
Merge pull request #97 from gatoravi/bam_readcount_ver_clinseq_2

use one version of bam-rc in clinseq
fix text color in bamqc dup rate plot

it was supposed to be colored by sample common name
add gc-bias plots to bamqc summary
Merge pull request #103 from tmooney/sanitize_model_name

Use sanitize_string_for_filesystem to make model name safe for path.
Merge pull request #105 from dufeiyu/bug_fix

Bug fix => to = and refactoring of parameter construction for BamReadcount
Updated class browser cache.
Updated `genome` tab completion.
Updated `gmt` tab completion.
Parameters need to be optional
Make RNAseq wrapper compatible with somvar and somval build inputs
allow translated properties for experts
have FPKM expert use translated property for sample_name
add vcf_id and vcf_description subroutines filters
handle case were genotype is not available for sample
skip unavailable interpreter fields when writing legend file