Update all ANTs transforms to align with updates to ANTs antsCorticalThickness.sh

Github issue re: renaming transforms: https://github.com/stnava/ANTs/issues/78#issuecomment-38187618

Outputs:
exampleSubjectToTemplate0GenericAffine.mat
exampleSubjectToTemplate1Warp.nii.gz
exampleTemplateToSubject0Warp.nii.gz
exampleTemplateToSubject1GenericAffine.mat

From Nick Tustison:

To warp the subject image to the template, one would call

antsApplyTransforms … -i /appsdir/freesurfer/subjects/OASIS-TRT-20-1/mri/orig/001.nii.gz -r /data/OASIS-30_Atropos_template/T_template0.nii.gz -t /data/antsCorticalThickness/OASIS-TRT-20-1/antsSubjectToTemplate1Warp.nii.gz -t /data/antsCorticalThickness/OASIS-TRT-20-1/antsSubjectToTemplate0GenericAffine.mat

To warp the template image to the subject, one would call

antsApplyTransforms … -i /data/OASIS-30_Atropos_template/T_template0.nii.gz -r /appsdir/freesurfer/subjects/OASIS-TRT-20-1/mri/orig/001.nii.gz -t /data/antsCorticalThickness/OASIS-TRT-20-1/antsTemplateToSubject1GenericAffine.mat -t /data/antsCorticalThickness/OASIS-TRT-20-1/antsTemplateToSubject0Warp.nii.gz