Removed Auto gen as new jekyll doesn't use this
This 'if' wasn't being picked up

Corrected it with some hackies. No idea why this stopped?
Added links to the nag pop up
Removed inline JS into the cm.js where possible

and added in moat comments
New minified files
Removed this into cm.js
this broke the links in the nav.

z-indexing FTW
Taking this out for now.

Want to get this shitter live