Initial commit
Merge branch 'master' of github.com:BaderLab/EnrichmentMapApp
Update README.md
Update README.md
initial version of wiki manual
revamp structure of manual.  Added edb, expanded RPT description, combined coeffecient, expansion of what parameters mean,
Added error handling for edb results that were created with a GSEA version prior to specified UTF-8 encoding. EM can't read EDB file unless it is UTF-8.  Error message specifies to re-generate GSEA results if this is the case.
(Untracked EM buildNumber prop file to avoid over-writing from other checkins.)
fixed null pointer when post analysis panel is launch when there are no networks or no enrichment maps.  Error message comes up but empty panel is still created.
added gitignore file
Merge branch 'EMrefactor'

Conflicts:
	.gitignore
Merge branch 'master' of github.com:BaderLab/EnrichmentMapApp
updated gitignore to include new directories
added profile to activate appropriate jar file depending on which os you are compiling on.
Fixed issue that manually changing the file names in the input panel were not being registered (drproject bug 186) and expanded p-value/q-value/overlap text boxes to take numbers with more precision than 3 (drproject bug 211)
fixed issue with sliders adding nodes back when they weren’t supposed to when you moved the sliders in a particular sequence.  Ticket #163 from drproject.
Added the ability to save just the leading edge when leading edge is visible in the expression viewer. ticket #210 from dr project
fixed bug with gsea generated class files causing null pointers when there were more than one pheontype in the expression file.
ticket #225 in dr project
Fixed restore session missing phenotype definitions in legend.
fixed issue with post analysis edges disappearing when the co-effecient slider bar is moved.  No post analysis nodes/edges should be effected by slider bars.
modified pom file to put tag into name of jar instead of branch name.  Also updated to use the latest version of maven git commit id plugin