Now that the test is using fake data, move expected output into repo.
+ account for breakdancer version 1.4.5

  - add breakdancer version 1.4.5 to the BREAKDANCER_VERSIONS hash
Merge pull request #6 from indraniel/breakdancer-1.4.5

add configuration for breakdancer 1.4.5
Merge pull request #4 from tmooney/move_clinseq_testgenomecommands_data

Now that the test is using fake data, move expected output into repo.
Updated class browser cache.
Updated `genome` tab completion.
Updated `gmt` tab completion.
Initial revision of GermlineOnly variant report and plan files.
Make joinx less aggressive when merging so it doesn't merge overlapping variants
Merge branch 'fireteam' into gb_master
Merge pull request #5 from gsanders/master

Stop using default bam_readcount_version.
Updated class browser cache.
Updated `genome` tab completion.
Updated `gmt` tab completion.
add file accessors
Add mutspec clinseq file access
add test for cancer-relevance-score
minor fix to doc
update clinseq cosmic version
update test