[FIX] raise exception if not enough data is present

git-svn-id: https://msproteomicstools.googlecode.com/svn/trunk@330 db641661-14cc-1e01-c2f8-e77ac6f8a696
feature_aligner bugfix: mscore to float in yaml
requantAlignedParallel.sh: do not write matrix if option not set


git-svn-id: https://msproteomicstools.googlecode.com/svn/trunk@331 db641661-14cc-1e01-c2f8-e77ac6f8a696
[FIX] fix for Python 2.6

git-svn-id: https://msproteomicstools.googlecode.com/svn/trunk@332 db641661-14cc-1e01-c2f8-e77ac6f8a696
[FIX] take Swath windows as floats

git-svn-id: https://msproteomicstools.googlecode.com/svn/trunk@333 db641661-14cc-1e01-c2f8-e77ac6f8a696
[FIX] check whether we are in the correct window

git-svn-id: https://msproteomicstools.googlecode.com/svn/trunk@334 db641661-14cc-1e01-c2f8-e77ac6f8a696
[FIX, #10] bugfix: scrambled matrix output

- only append to the current matrix writer once we are sure we really
  want to write out the line

git-svn-id: https://msproteomicstools.googlecode.com/svn/trunk@335 db641661-14cc-1e01-c2f8-e77ac6f8a696
[FIX] bugfix

- BUG: peptide would get appended to the wrong protein

- fix by appending it to the matching protein from the dictionary

git-svn-id: https://msproteomicstools.googlecode.com/svn/trunk@336 db641661-14cc-1e01-c2f8-e77ac6f8a696
[FEATURE] spectrast2tsv.py: Support for Spectrast 5.0 iRT fields

git-svn-id: https://msproteomicstools.googlecode.com/svn/trunk@337 db641661-14cc-1e01-c2f8-e77ac6f8a696
tsv2traml

git-svn-id: https://msproteomicstools.googlecode.com/svn/trunk@338 db641661-14cc-1e01-c2f8-e77ac6f8a696
feature_aligner: new option matrix_output_method, equals conpute_full_matrix output_method option.
compute_full_matrix: extended option output_method with option 'full' to write Intensity, RT + score
matrixwriters: New support for xlsx files (>65000 rows, >256columns)

git-svn-id: https://msproteomicstools.googlecode.com/svn/trunk@339 db641661-14cc-1e01-c2f8-e77ac6f8a696
xlsxwriter: so young and already a bug: does not support writing of NAN

git-svn-id: https://msproteomicstools.googlecode.com/svn/trunk@340 db641661-14cc-1e01-c2f8-e77ac6f8a696
[FEATURE] add matrix output method to requant

- adjust test to use RT in the test (produce the same output file)
- [FIX] fix tests (use tsv)

git-svn-id: https://msproteomicstools.googlecode.com/svn/trunk@341 db641661-14cc-1e01-c2f8-e77ac6f8a696
[FIX] catch error when input paramfile is faulty

git-svn-id: https://msproteomicstools.googlecode.com/svn/trunk@342 db641661-14cc-1e01-c2f8-e77ac6f8a696
[MOVE] move pepxml to csv converter, fix test

git-svn-id: https://msproteomicstools.googlecode.com/svn/trunk@343 db641661-14cc-1e01-c2f8-e77ac6f8a696
[TEST] fix test

- fix the path of the testfile

git-svn-id: https://msproteomicstools.googlecode.com/svn/trunk@344 db641661-14cc-1e01-c2f8-e77ac6f8a696
[TEST] mark slow tests

git-svn-id: https://msproteomicstools.googlecode.com/svn/trunk@345 db641661-14cc-1e01-c2f8-e77ac6f8a696
[TEST] add test for smoothing operator

git-svn-id: https://msproteomicstools.googlecode.com/svn/trunk@346 db641661-14cc-1e01-c2f8-e77ac6f8a696
[FIX] add iteration method

git-svn-id: https://msproteomicstools.googlecode.com/svn/trunk@347 db641661-14cc-1e01-c2f8-e77ac6f8a696
[FEATURE] change how best_overall algorithm works

- Now uses the peakgroup with the best score within the pre-deterimined
  RT window (instead of using the closest peakgroup in RT)
- In global_best_overall do now allow to add the "best" peakgroup of the
  chromatogram if it falls outside the RT window

git-svn-id: https://msproteomicstools.googlecode.com/svn/trunk@348 db641661-14cc-1e01-c2f8-e77ac6f8a696
[FIX] bugfix

git-svn-id: https://msproteomicstools.googlecode.com/svn/trunk@349 db641661-14cc-1e01-c2f8-e77ac6f8a696