[BAM]Implement: Implementation progress in realigner, OpenMP processing
[BAM]Implement: Progress in realigner OpenMP implementation
[BAM]Implement: Realigne OpenMP progress. Bugfixes
[BAM]Implement: OpenMP realigner progress
[LIB]Fix: Fixed some compiling warnings
[BAM]Fix: Major bugfixes
[BAM]Implement: Implementation progress in realigner with OpenMP
[BAM]Implement: OpenMP realigner implementation progress
[BAM]Implement: OpenMP realigner implementation progress
[BAM]Fixes: Realigner singlethreaded mode fixed
[BAM]Fix: Minor bug fixing
Merge branch 'realigner' into develop