Setting up program
file organization
created new program file to start over and work in the color image from the beginning. landmark now works, next up is registration.
cleaned up folder
modified .gitignore and added comment
Working LandmarkRegistration program takes in a colored image and gives the resulting colored image. The registration calculations are carried out on a gray version of the image and then the resulting transform is applied to the color image. Next up: outputting the final transformation to a file and writing a program to read in the transformation and apply it to an image.
Program now works and adds the two transformations together (presumably) but I'm getting a malloc error after the program completes. Will take a look at that tomorrow and make second program to apply transformation to images in order to verify it is adding the transformations correctly.
LandmarkRegistration works now. ApplyTransform was started. Upon further reading, I've concluded that I need to change how LandmarkRegistration writes the parameters to the file in order to make it readable to ApplyTransform. I'll work on that next. So the current LandmarkRegistration successfully registers the image and got rid of the malloc error upon termination but it does not produce and usable parameters file and ApplyTransform is good for nothing at the moment.
Merge branch 'master' into develop

ts
LandmarkRegistration works as expected now. It seems that in order to apply the resulting transform to an image, it needs to know the spacing and origin of the fixed image (information not currently included in the transform file). Tomorrow I'll try writing that information to the file so that we can apply the transform to a moving image without needed the fixed image.
LandmarkRegistration now writes fixed image parameters to file so that ApplyTransform can do the full transform with only the transform file and moving image.
ever closer to successfully reading in the transforms. thinPlateSplineKernelTransform is being tricky.
back to trying to read in thin plate spline kernel transform rather than simply kernel transform
started to make it create video frames. does not work yet.
Added swing library to repo for LandmarkGenerator app
update layout
beginning to work on outputting images at each iteration
Trying to grab current position from optimizer rather than final information from registration.
now outputs images at each iteration. needs origin and spacing adjustment to be done tomorrow along with a versioned release.
Merge branch 'develop' of https://github.com/viscenter/registration-toolkit into develop