test commit and push to new master repository trait_odm_to_i2b2.
Added class MetaDataWithIncludes.java. Halfway implementation of includes.
Halfway debugging metaDataWithIncludes
MetaDataWithIncludes finished??
MetaDataWithIncludes finished.
Debugged for the case where numerical value is set to a space.
Variety of changes. Filepaths OS-independent. Questions become preferred names. ItemGroups included in hierarchy. Columns in conceptMap file swapped.
Replaced whitespaces with underscores in filenames. Checks whether questions have only whitespace in assigning them as preferred name.
Fixed the problem of the first column with the subject ids, apart for the fact that these should not be longer than 20 characters.
Added checkstyle. Corrected some style problems. Halfway allowing updates in clinical data file, by keeping the clinical data in memory.
Enabled correct output of trailing update sections in ODM.
Making the code nicer with checkstyle.
I2B2ODMStudyHandler: Added javadoc and moved code from the constructor to processODM.
Added the studyOID field to the MetaDataWithIncludes class and a getter. Assembled public methods in I2B2ODMStudyHandler.java.
Halfway adding the class OdmToFilesConvertor.
Continued adding the class OdmToFilesConvertor.
OdmToFilesConverter runs now instead of I2B2ODMStudyHandler.java. Parts of FileExporter use this class now. Not ready yet.
Integration of OdmToFilesConvertor.java completed. Still needs testing. I2B2ODMStudyHandler.java needs to be replaced with original.
Tested OdmToFilesConverter.java and replaced I2B2ODMStudyHandler.java and I2B2StudyInfo.java by the originals of the REDCap-to-i2b2 code.
Added a loop for defining study.