Removed faulty test from moleculeTest

I believe this has been implemented differently on
the master branch.
Update getTS call to match new database structure

Before there was an options call, but that has been
removed for the sake of reducing code duplication (85cf6440).
This corrects the getTS call to be compatible, but it
may be done differently long term.
Fix transitionstates.py calls for working with the database

The old method word with the old database. Things have
been modified, so this needed to be as well.
Copy comments for the group additive value storing

Commented out, so not implemented yet, but the checking of
data is a little different. Copied how it's done from the
kinetics as it might need to be reworked in the TS section.
Fixed a strange change in the mopac file

Not sure what I did in the merge, but it's now fixed.
QM molecule changes to work with TS geometries
Remove mopac import from qm/reaction

Reaction is imported in mopac as well, so it leads to
an error caused by the redundancy. Not sure how that
was in the file, but it's fixed now.