Bit of testing for VariantPools
Support for stripping all initially matching bases in VCFLineParser, which might be nice for FreeBayes vcfs. Must be turned off for ROC calculation
Removed broken dependency on commons-lang
Dont emit stack trace if jar file modified time cant be read
Rename some test classes
Moved test VCFs into a testdata directory.
Merge branch 'master' of https://github.com/ARUP-NGS/Pipeline
Initial work on solr annotator
Merge branch 'master' of https://github.com/ARUP-NGS/Pipeline
More work on basic solr annotator, implemented batching multiple variants to save time
Updated SplicingPredictionAnnotator to write to a temporary CSV file to relieve the requirment for VarViewWriter to run.
Merge branch 'master' of https://github.com/ARUP-NGS/Pipeline
Clean-up SplicingPredictionAnnotator.
Modify OperatorHooks to remember server.url attribute
Add unit test/testvcfs: TestVCFLineParser
Add BCRABL test VCF.
TestVCFLineParser
Updated TestVCFLineParser
Removed accessions
test