Created a library subfolder.
A sample fasta file.
Ignore compiled/optimized Python files.
Decoy entries in the test sample.
Parse fasta files without the need for biopython.
Using lib.fasta instead of biopython (significantly faster!)
Removed unnecessary str conversions (not needed as we now use lib.fasta instead of biopython).
Unavailable sequence handling (+removed unneeded imports).
fasta.as_dict(): returns a dictionary of ids and seqs.
Report masked regions in a fasta file.
A test sample.
"report-masked.py": find masked regions in a multifasta and report them as BED. "fix-splign-orf" now faster (dropped biopython).