Refactoring Commands

Now that we have the `commands` package set up, it's time to move everything over to it. This PR is currently not ready for merge, just setting it up for CR.

The basic scope of this PR is as follows:
* Set up transports based on `commands` package (HTTP RPC server/client, CLI command handling)
* Refactor existing commands for the new API (won't be a 1:1 mapping, commands will change)
* Make changes to `commands` package when necessary
Since the input only comes from HTTP or CLI, and all the options even get processed/converted before we get to this, it's impossible for `enc` to not be a string.

But I realize how scary this syntax is, I wish go didn't make me do it like this. :disappointed: