need to change integer definition of bio assembly to string to support "PAU" and "XAU" biological units (e.g. 1A34). Also smarter logging.
fixing a bug with mapping Transformations labeled with P or X instead of an integer to the correct assembly.
another fix for parsong PAU and XAU bio assemblies
Deprecated printMatrix as Matrix.toString() provides the same
functionality. printMatrix is also not used within BioJava.
Convert org.biojava.bio.structure (main) in biojava3-structure project
to use slf4j.  Several of the print statements were left based on
intention of method
updating guava dependency version to 18.0, fixes #189
Create readme.md

starting to provide a readme file for the sequencing project
Create readme.md
Merge pull request #190 from heuermh/guava-18

Updating guava dependency version to 18.0, fixes #189
Create readme.md
Create readme.md
Create readme.md
Merge remote-tracking branch 'upstream/master'
Merge pull request #192 from benjamintboyle/master

Update org.biojava.bio.structure (main) package in biojava3-structure project to use slf4j #155