This commit was generated by cvs2svn to compensate for changes in r2,
which included commits to RCS files with non-trunk default branches.

svn path=/bioperl-live/trunk/; revision=775
added in SeqFeature

svn path=/bioperl-live/trunk/; revision=858
moved SeqFeature down one, added in EMBL.pm

svn path=/bioperl-live/trunk/; revision=864
Added an incremental loader for GFF to mysql databases.  This is just
a temporary placeholder because it uses a hard-coded GFF location.

Fixed numerous small bugs in the Feature implementation, including the
non-equivalence of the stop() and end() methods!!!

svn path=/bioperl-live/trunk/; revision=2610
moved load_gff.pl to examples/; this should be deleted eventually

svn path=/bioperl-live/trunk/; revision=2652
First commit for an interface specification for objects representing sequence qualities.

svn path=/bioperl-live/trunk/; revision=2691
First commit of a module utilizing QualI.pm interfaces. Represents sequence qualities.

svn path=/bioperl-live/trunk/; revision=2692
First commit of an object representing a sequence and its qualities.

svn path=/bioperl-live/trunk/; revision=2693
These are in the wrong place.

svn path=/bioperl-live/trunk/; revision=2704
an interface for describing alignments

svn path=/bioperl-live/trunk/; revision=3319
POD corrections, editing

svn path=/bioperl-live/trunk/; revision=3436
doc changes

svn path=/bioperl-live/trunk/; revision=3562
allow subselection of sequences in alignment to be non continuous

svn path=/bioperl-live/trunk/; revision=3602
added POD and overall percent id method to interface

svn path=/bioperl-live/trunk/; revision=3770
Minor pod errors

svn path=/bioperl-live/trunk/; revision=4280
Replaced bioperl.org/bioperl-bugs/ with bugzilla.bioperl.org.

svn path=/bioperl-live/trunk/; revision=4940
cleaned lines around pod command paragraphs

svn path=/bioperl-live/trunk/; revision=6076
typo fixed

svn path=/bioperl-live/trunk/; revision=7925
fixing typos

svn path=/bioperl-live/trunk/; revision=9133
Removed all references to submitting bugs using email to the bugs list. All links to http://bioperl.org/bioperl-bugs/ were replaced with http://bugzilla.bioperl.org/.

svn path=/bioperl-live/trunk/; revision=9345