[maven-release-plugin] prepare for next development iteration

git-svn-id: http://code.open-bio.org/repos/biojava/biojava-live/trunk@9941 7c6358e6-4a41-0410-a743-a5b2a554c398
Commited the RCSB RESTful package, org.biojava.bio.structure.rcsb, along with a unit test and its resources.

git-svn-id: http://code.open-bio.org/repos/biojava/biojava-live/trunk@9943 7c6358e6-4a41-0410-a743-a5b2a554c398
changing specification for URL (so cruisecontrol can resolve it)

git-svn-id: http://code.open-bio.org/repos/biojava/biojava-live/trunk@9944 7c6358e6-4a41-0410-a743-a5b2a554c398
Removed getSuppressed() call so it can compile with Java 1.6 (and cleaned the error messages up a little).

git-svn-id: http://code.open-bio.org/repos/biojava/biojava-live/trunk@9945 7c6358e6-4a41-0410-a743-a5b2a554c398
making error message readable

git-svn-id: http://code.open-bio.org/repos/biojava/biojava-live/trunk@9946 7c6358e6-4a41-0410-a743-a5b2a554c398
more print...

git-svn-id: http://code.open-bio.org/repos/biojava/biojava-live/trunk@9947 7c6358e6-4a41-0410-a743-a5b2a554c398
adding a couple of more utility methods

git-svn-id: http://code.open-bio.org/repos/biojava/biojava-live/trunk@9949 7c6358e6-4a41-0410-a743-a5b2a554c398
now correctly setting NMR flag...

git-svn-id: http://code.open-bio.org/repos/biojava/biojava-live/trunk@9950 7c6358e6-4a41-0410-a743-a5b2a554c398
actually that flag is not needed

git-svn-id: http://code.open-bio.org/repos/biojava/biojava-live/trunk@9951 7c6358e6-4a41-0410-a743-a5b2a554c398
need to set flag that this is a biological assembly...

git-svn-id: http://code.open-bio.org/repos/biojava/biojava-live/trunk@9952 7c6358e6-4a41-0410-a743-a5b2a554c398
less verbose

git-svn-id: http://code.open-bio.org/repos/biojava/biojava-live/trunk@9953 7c6358e6-4a41-0410-a743-a5b2a554c398
more clear warning message

git-svn-id: http://code.open-bio.org/repos/biojava/biojava-live/trunk@9954 7c6358e6-4a41-0410-a743-a5b2a554c398
now using the standard UserConfiguration to get the PDB File path...

git-svn-id: http://code.open-bio.org/repos/biojava/biojava-live/trunk@9955 7c6358e6-4a41-0410-a743-a5b2a554c398
Committed ResidueRange and AtomPositionMap, and their test cases.

git-svn-id: http://code.open-bio.org/repos/biojava/biojava-live/trunk@9956 7c6358e6-4a41-0410-a743-a5b2a554c398
fixing hard coded tmp path

git-svn-id: http://code.open-bio.org/repos/biojava/biojava-live/trunk@9957 7c6358e6-4a41-0410-a743-a5b2a554c398
making sure the atomcache is using a local tmp dir, not a hardcoded path

git-svn-id: http://code.open-bio.org/repos/biojava/biojava-live/trunk@9958 7c6358e6-4a41-0410-a743-a5b2a554c398
Probable fix for endless loop in eigenvector calculations. See http://cio.nist.gov/esd/emaildir/lists/jama/msg00834.html

git-svn-id: http://code.open-bio.org/repos/biojava/biojava-live/trunk@9959 7c6358e6-4a41-0410-a743-a5b2a554c398
Probable fix for endless loop in eigenvector calculations. See http://cio.nist.gov/esd/emaildir/lists/jama/msg00834.html

git-svn-id: http://code.open-bio.org/repos/biojava/biojava-live/trunk@9960 7c6358e6-4a41-0410-a743-a5b2a554c398
update to parser to make sure 2BGJ , 2J4Z, 2JBP are being parsed correctly. (probably there are more)

git-svn-id: http://code.open-bio.org/repos/biojava/biojava-live/trunk@9961 7c6358e6-4a41-0410-a743-a5b2a554c398
update to parser to make sure 2BGJ , 2J4Z, 2JBP are being parsed correctly. (probably there are more)

git-svn-id: http://code.open-bio.org/repos/biojava/biojava-live/trunk@9962 7c6358e6-4a41-0410-a743-a5b2a554c398