new dev version

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/MSnbase@87903 bc3139a8-67e5-0310-9ffc-ced21a209358
msx with id data

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/MSnbase@87904 bc3139a8-67e5-0310-9ffc-ced21a209358
quant unit testing

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/MSnbase@87905 bc3139a8-67e5-0310-9ffc-ced21a209358
removeMultipleAssignments,MSnExp method

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/MSnbase@87906 bc3139a8-67e5-0310-9ffc-ced21a209358
fixing labelfree quant

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/MSnbase@87907 bc3139a8-67e5-0310-9ffc-ced21a209358
lf quant and unit testing

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/MSnbase@87908 bc3139a8-67e5-0310-9ffc-ced21a209358
quantify method for label-free and doc

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/MSnbase@87909 bc3139a8-67e5-0310-9ffc-ced21a209358
updated vignette

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/MSnbase@87910 bc3139a8-67e5-0310-9ffc-ced21a209358
finalised label-free pipeline

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/MSnbase@87911 bc3139a8-67e5-0310-9ffc-ced21a209358
MSnbase TODO list

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/MSnbase@87912 bc3139a8-67e5-0310-9ffc-ced21a209358
fix test after filtering NA ids in count_MSnSet

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/MSnbase@87913 bc3139a8-67e5-0310-9ffc-ced21a209358
conflicts
Merge branch 'master' of github.com:lgatto/MSnbase
documentation updates
update dependency to R >= 3.1 because of the introduction of anyNA in a7d05feb
increase version number