initial import
readme file
add prank to estimate NJ tree for testing
pass alignment to mergeTree instead of sequence files
calculate dna frequences at the begin for all align procedures
delete explicit file_manager parameter for coestimate to avoid double values during subiteration and delete some print clause
update readme file
iteratively improve the alignment result on each gene file and then concatenate the result to infer the species tree
make option to enable the output of additonal information from PRANK
add a script to setup virtual python environment
code optimization
fix the bug on computers with only one cpu
fix the bug when the maxium size of subset is not specified
fix a bug of the species tree inference when the sequence name not exceeds 10 characters
package the tool
Merge branch 'master' of bio1012:/work/git/iprank
pakcage the files again
add init file for tool
correct the script for setting up virtual environment
correct the wasabi luanch script for later development