Merge branch 'master' of qlap27v:LoFreq


Former-commit-id: 94256c11e1013a0b52db7f9fd0f7dad651240aab
Initial commit
Initial commit


Former-commit-id: 5255e023b0dabf096035c92b78117bd47df06051
Added multtest.[ch]
Added multtest.[ch]


Former-commit-id: b87bced67e24bcbd6894140bd744fa4f97784e24
Added command line parsing.
Still not functional
Added command line parsing.
Still not functional


Former-commit-id: 17ab0790ea36f4329ba594cc8eba99169b75c3d7
single define rename
single define rename


Former-commit-id: d9d56650c2351e207eb2a6884e3e2a0fa00247e7
Now actually storing vars and printing
Now actually storing vars and printing


Former-commit-id: 397efdc7c567717fc88f90ff63a0a62b97c82fec
- improved usage info
- chrom list is now sorted by num mapped reads (or length if
  mapping info is missing) which should ensure that all
  processors are always busy
- improved usage info
- chrom list is now sorted by num mapped reads (or length if
  mapping info is missing) which should ensure that all
  processors are always busy


Former-commit-id: a39567e014e92d7544bc728a9712d26e74e8af85
Updated calls to new pp arguments
Updated calls to new pp arguments


Former-commit-id: 0bddfc05a7a9c72eaf8823d923e9bad389992282
Removed mistakenly commited pdb trace
Removed mistakenly commited pdb trace


Former-commit-id: 5fdd9107f888a6c92f1f6d9fa25f356b7a718c89
Now using semicolon instead of comma to separate filters and thereby conform to standard
Now using semicolon instead of comma to separate filters and thereby conform to standard


Former-commit-id: 8ddfe94c0445d85063f09d9c5b9cc09afec433a2
Now using vcf-validator. Previous perl module call didn't do anything