Fixed log file bug with Windows 8.1

Now generic for all Windows except XP
Added Mac OS path to be tested...

for temp files
Fixed Klebsiella pneumoniae load bug
Removed 200+ warnings

Removed LocalConfig static methods and fields, maintained singleton pattern
Removed unused imports and methods to silence more warnings
added "@Suppresswarnings" to silence more warnings
Set access modifiers to 'static' to silence more warnings
removed unused variables to silence warnings