Had to old atom indices file to match saved reference generators.
Merge pull request #286 from SimTk/again

Had to old atom indices file to match saved reference generators.
Fix for save_structures issue.
Hackaround the script ConvertData test failure.
Removed extra comment.
Reverted some changes to test_wrappers.
Reverted some changes to test_wrappers.
Updated projectinfo to use .h5 files instead."
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Deleted reference lh5 files.
Fix for #287
Fix in FAH project builder to handle possible XTC exceptions from MDTraj
Merge pull request #288 from SimTk/sherman

Fixed more test failures.
Added analytical test for FAHProject.
Added docstrings for reference data.
No longer need import skipif
minor cleanup of reference data
Added ref data
Merge pull request #291 from SimTk/fahproject

Fahproject
Added fix for #300 and simple test.
Slightly more powerful test of trim_states