InstData Import/GMT Picard: add downsample ratio mixin
Update MetaDB to use schema.table

Goes with UR's changes to eliminate use of the 'owner' column in the MetaDB
Configuration for GMSchema to get 'ur update classes' to work
Results from "ur update classes-from-db"

Mostly formatting/whitespace.

Some properties have updated type info, probably due to the switch from
Oracle to Postgres
Stop relying on Measurable to determine source object.
Stop inheriting from Measurable.
Remove Measurable.
Whitespace.
Remove test for committing new Site/TGI/PopulationGroups

We don't generally want to add to the source of our synch, and this
test is failing due to an FK to the PHENOTYPE_MEASURABLE table we're
trying to stop using.  (We could bring the test back once the table
is removed... but it's probably not useful.)
re-add the trailing comma
Move 'has_optional_output' section down
change UR submodule to point to the remove-owner branch
Respect the max_records_in_ram property by passing along to picard command.  Set re_reverse default to true to match Picard default behaviour.
Add homopolymer indel filter to trio reports.  Use meaningful output file extensions. Update the test data directory with the new output files.
Merge branch 'master' of https://github.com/genome/genome into trio_with_homopolymer
Add the test data
Fix property definition for subclass_name

The class rewriter (through 'ur update classes-from-db') got it wrong
change UR submodule to point to the remove-owner-with-recent branch

Same as the remove-owner branch, but rebase onto current master to pull
in changes necessary for SoftwareResults to calculate their lookup_hash
correctly
Merge branch 'master' into ur-update

Conflicts:
	lib/perl/Genome/Config/Tag.pm
Add bam_readcount_version to somatic-variation pp, use it.

Previously the CreateReport step was just leaning on the default version
of bam-readcount. This will ensure this no longer happens.