Adding & updating modules and tests to enable finding of transcriptome files
Updated to reflect transcriptome additions
Merge branch 'devel' of https://github.com/wtsi-npg/npg_tracking into devel
private accessors added to avoid repeating logic. ENSEMBL_RELEASE_VERSION added to make directory structure clearer.
symbolic link entry removed
pulled latest from wtsi-devel; transcriptome utility - POD, PBD, indentation fixes
directory structures now generated on the fly in /tmp and xml files copied over
mouse example
mouse example
for mouse example
Merge pull request #1 from mgcam/transcriptome

transcriptome utility - POD, PBD, indentation fixes
Merge branch 'transcriptome' of https://github.com/mgcam/npg_tracking into mgcam-transcriptome
Merge branch 'transcriptome' of https://github.com/jidur/npg_tracking into transcriptome
3 xml files added which are copied by 10-transcriptome.t to tmp dir
removed transcriptomes subdirectory as now in /tmp and updated MANIFEST
additions to prevent uninitialised warning if no reference genome set
reference genome removed for test
added test for case where no reference genome specified in sample or study xml
trailing whitespace removed
line removed