Various tools to inspect and reorient nifti files:
nii2snapshot.py creates an quick overview of the contents of a nifti file.
nii2svg.py (incomplete) converts a nifti files into a series of png slices, ready for processing by an png2svg converter.
nii_reorient.py swaps dimensions of a nifti file that violates the standard by permuting the affine matrices stored in the header.
common_nifti_errors.txt describes common violations of the Nifti1 standard.
modified nii_reorient to use ijk instead of xyz
Small textual improvements to common_nifti_errors
Renamed nii2svg to nii2png, and fixed minor bugs.
dims = img.shape was before apply_orientation
PIL was still used, now eliminated
Merge branch 'master' of https://github.com/INCF/Vectorization-of-brain-atlases
Merge branch 'master' of https://github.com/INCF/Vectorization-of-brain-atlases