expose dpContext for reusing allocated space
forgot dp_context.h
and include dp_context
[FIX] adapt align module tests to alignContext
[INTERNAL,NOP] remove old code, add convenience function
[FIX] add API-calls of pre-dpContext-time
Merge branch 'develop' of https://github.com/seqan/seqan into alignContext
[API, FIX] Fixes variaous modules affected by the DPContext feature. Refactors the dp_setup function to reduce the number of wrappers.
[FIX] alignContext stuff based on rrahn's comments
add support for recycling dpContext
still no proper re-usage of align-rows
[FIX] adapt align_extend to new dp-stuff by Rene
[FIX] progress on clearing the align objects. BUG in clear(arraygaps) found.
[FIX,INTERNAL] un-cpp11-ify
[NOP] cleanup
Merge pull request #405 from weese/hotfix/fiona-vs8

[FIX] fixed fiona issues and mingw warnings
Merge pull request #402 from singerj/hotfix-knime-flexbar

Hotfix knime flexbar
Merge pull request #407 from singerj/hotfix-knime-flexbar

[FIX] Fixed a default value problem with the output files.
[FEATURE] Computing more statistics in compute_gain.
Merge pull request #409 from holtgrewe/feature/compute_gain_stats

[FEAUTRE] More statistics in compute_gain.