bumped sdp-cytoscape3; investigative work for #593
bump model-builder; change log level
bumped model-builder; closes #580
updated changelog for 1.3.5
bumped plugins; updated certs
bumped; fixes #608; updated changelog for 1.3.6
bumped model-builder; closes #623
added changes for 1.3.7
bumped kam-nav; closes OpenBEL/kam-nav#32

update changelog for 1.3.8
cytoscape dev/dist to version 3.1.1

bumped plugins for rcr-related work

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Squashed commit of the following:

commit 6910c5b2418c54381eee0e0127e6e8d8bc75976d
Author: Anthony Bargnesi <abargnesi@selventa.com>
Date:   Tue Oct 28 08:25:54 2014 -0400

    bump; removed code; fix some issues

commit 92c07a21047cf843687860dd541940bf78877f46
Author: Anthony Bargnesi <abargnesi@selventa.com>
Date:   Mon Oct 27 16:07:05 2014 -0400

    bumped; most of rcr work; resolve nodes left

commit 31b027faedb294c0e5acb20b945df5f3c29963d4
Author: Anthony Bargnesi <abargnesi@selventa.com>
Date:   Fri Oct 24 16:11:08 2014 -0400

    bumped plugins for rcr work

commit 5bcf11b10c96cbb87808f082e333fba74d17ea72
Author: Anthony Bargnesi <abargnesi@selventa.com>
Date:   Fri Oct 24 08:53:12 2014 -0400

    fixed dev logging

commit 49b0c1dece3edc399049b97c8fc14b76ce6b484c
Author: Anthony Bargnesi <abargnesi@selventa.com>
Date:   Thu Oct 23 10:06:22 2014 -0400

    bumped plugins; 3.1.1 update; node width fix

commit 10e07007fd11d7f1ce64dd113bfdbce5eb1ec6b4
Author: Anthony Bargnesi <abargnesi@selventa.com>
Date:   Thu Oct 23 10:02:27 2014 -0400

    squashed from cy311...

    updated cytoscape 3.1.1 dev / dist

    updated scripts/package.sh to better support packaging of DIST_CY3_DIR

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    Squashed commit of the following:

    commit 5da49ce379d7fa4cd3594483b6321b8dd30035f4
    Author: Anthony Bargnesi <abargnesi@selventa.com>
    Date:   Thu Oct 23 09:48:22 2014 -0400

        bumped plugins; update to 3.1.1; node width fix

    commit d7a7f5a2275dcd8c7196dc6bebe86bc41a20ce77
    Author: Anthony Bargnesi <abargnesi@selventa.com>
    Date:   Thu Oct 23 09:41:38 2014 -0400

        bumped dev/dist cytoscape to 3.1.1(for workgroups)

    commit 3e27319d50240dba3f5de0465c54717bcc28f521
    Author: Anthony Bargnesi <abargnesi@selventa.com>
    Date:   Thu Oct 23 09:38:00 2014 -0400

        report cytoscape distribution (e.g. DIST_CY3_DIR)

    commit b39bb966fd0245579d33a763172107bd7b614b2f
    Author: Anthony Bargnesi <abargnesi@selventa.com>
    Date:   Thu Oct 23 08:41:52 2014 -0400

        build dist cytoscape archive based on environment

        archives the DIST_CY3_DIR directory to cytoscape.zip

        retains a "cytoscape" symlink at DEV_BUILD_DIR/cytoscape that points to
        DIST_CY3_DIR