update script and configuration files 

1. runGEMCSCAnalyzer_cfg.py , add "theinputfiles"
2, matchingEfficiency.py , add the code to  make several new plots about gem matching eff
3.runCustomMuL1Trigger_cfg.py, update the " use6parts" for GEM geometry
4.runGEMCSCTriggerEfficiency_cfg.py, fix a bug to make it work