updated description file
NB command now vectorized
doc skeletons for add_error and simexpcountmat
documentation for simulate_experiment
code cleanup for simulate_experiment.R
little count_transcripts function
huge doc update
NB documentation
elaborates on simulate_experiment
updates docs for simulate_experiment
adds docs for simulate_experiment_countmat
documents generate_fragments + updates namespace/description
adds docs for generate_fragments
documents add_error
documents count_transcripts
documents get_reads
simulate_experiment lines are all <100 char long + updated example
documents reverse_complement
documents write_reads
docs for simulate_experiment_countmat now respect the column<100 char rule