File clean-up and .gitignore
.gitignore
Update AnagramSolver.java

Organized imports and fixed spacing.
Ignore settings, logs, and nicks folders.

And remove said folders from the project.
Ignore .classpath and .project.
Moved code obtained from the internet into jars.
Documentation
Re-add Reddit.java
Added link to documentation in !ejavabot command.
Changes to documentation.

Added links to the jre and pircbot javadocs.
Moved pircbo doc reference links to eduardog3000.github.io/pircbot/doc.
Revert "Moved pircbo doc reference links to eduardog3000.github.io/pircbot/doc."

This reverts commit 7928102ffe0e70123a905b2680a09ebebc6691f9.
Revert "Revert "Moved pircbo doc reference links to eduardog3000.github.io/pircbot/doc.""

This reverts commit ad3579f0544a7257a4e9073ec782b28903bd9528.
Added !sudo and improved !iam/who is.

Also fixed bug where channels get added to settings file multiple times.
Channel class for disabling commands per channel.

As well as putting executeCommand() into a Thread.
Improvements to !enable and !disable.
Fully deprecated ReadAndWrite.
Minor changes.
Added CommandZOTip
Improved CommandWhoIs and CommandIAm