Adding a fix for Chromosome 0, makeing code more robust
Merge pull request #9 from dbolser-ebi/master

Adding a fix for case of Chromosome 0, making code more robust
Merge pull request #8 from danstaines/hotfix/multispecies_genome_statistics

[ENSCORESW-885] fix for get and update to support multispecies databases
ENSCORESW-888: transcript version number increment if number of exons change
ENSCORESW-882: consistent archiving, archive if there has been a change
ENSCORESW-854: added lookup for refseq and ccds models in otherfeatures database
expects stable ids to be unique
duplicated declaration
Split FTP get method into one that dumps to memory, and the other that dumps to a file explicitly. This is to avoid ambiguity in downloading and to aid code readability.
ENSCORESW-883: url updated for DBASS ressources
DBASS5 source reinstated
dbass download csv comes with quotes
remove before parsing
ENSCORESW-888: version increment for transcripts if there is a change
this includes sequence change but also changes in exon and/or location
[ENSCORESW-868] Eliminating all evidence of SplicingEvent objects. Ensembl no longer uses them.
Revert "when running remove method, run _pre_remove method to update meta_coord table"

This reverts commit 25f23f365eb702db74e137ce6d77efc39b8617e7.
Revert "when removing features, update meta_coord accordingly"

This reverts commit 24c300387f7fccfc2641a5982ae9cb2f7b650224.
Do not attempt to update meta_coord when removing a feature, this can have bad consequences

Conflicts:

	modules/Bio/EnsEMBL/DBSQL/BaseFeatureAdaptor.pm
do not specify coord_system version if undefined
added remove_feature_type method
can clean up the meta_coord table for a given feature/coord_system
should only be used if you are sure there are no more feature left of that type
Added missing patch_75_76_c.sql into the meta table
Merge pull request #10 from thomasmaurel/master

Added missing patch_75_76_c.sql into the meta table
merged from release/75
Merge pull request #13 from ens-st3/master

Vega specific code merged from release/75