Restructuring the Com Files to use RAPTOR for trac
staging version 0.1.04 tons of changes made
Added programs to generate Coms and added error handling
fixed typo
Set cap on parallel jobs running
Added a mode option to stop at ccderase or alignment
Almost to release
Totally redid getopt module
Continued staging for next version
Added program to handle the mess from Dose Frac.
So many changes, added a lot to MRCIO and handle DF images
Merge remote-tracking branch 'devel/master' into development
Rename makeDFCstack to DoseFracToStack
Fixed DoseFracToStack errors
Finalized DoseFracToStack and began doc'ing
temporary push for showing.
Temporary push for dose_frac_to_stack
Testing phase for 0.2
First release of 0.2.0
Everything should be good now for 0.2.0