added a new rdf:type :MappingPosition to avoid having blahknodes in HELP for :PeptideMapping and :AntibodyMapping
added :NameList to blah nodes containing a list of names (temporary solution), names representation will be refactored in 2015
small changes
added missing dot !
added cv: as a synodnym of prefix term:
renamed :developmentalStage to :DevelopmentalStageInfo
now :Publication, :Xref and :Identifier are all connected to other objects with the single predicate :reference, sample queries adapted
replaced :withEvidence with :evidence including in sample queries
replaced :withNegativeEvidence with :negativeEvidence including in sample queries
replaced :with with :interactant including in the sample queries
replaced :specificity with :isoformSpecificity incl. in sample queries
uncommented :swissprotPage predicate which is useful for federated query with drug bank
adapted sql and templates to use the cv_api_name column of cv_term_categories (ontologies) rather than cv_name which is not camel cased
replaced predicate :in with predicate :term in templates and example queries
replaced prefix term: with prefix cv:
Merge branch 'develop' into ttl_refactoring
new method to return all parents but the root node and its use in annotation domain for retrieving parent predicates
adapted predicate names for expression:
- :expression as parent of :developmentalStageInfo, :expressionProfile, :expressionInfo
- :undetectedExpression links an isoform to an annotation having only negative/undetected expression level in all evidences
- :detectedExpression links an isoform to an annotation having at least one evidence showing positive, low, medium, high expression level
uncommented evidence :negative xxx:boolean triples
temp restore of sparql proxy function
updated queries