Revert "Removing the annotation processing by Tomcat since that's unnecessary. Only AS needs it, and Tomee handles that now."

This reverts commit 6cd5231b27858122c75ea7594ab12214cd360dca.
Revert "Adding original source of DefaultInstanceManager tomcat 7.0.52"

This reverts commit 5788fc7f16fd7913482a9a07ffc4f17155547b58.