Version bump of spark-ec2 scripts

This will allow us to change things in spark-ec2 related to the 1.0 release.

Author: Patrick Wendell <pwendell@gmail.com>

Closes #809 from pwendell/spark-ec2 and squashes the following commits:

59117fb [Patrick Wendell] Version bump of spark-ec2 scripts
(cherry picked from commit c0ab85d7320cea90e6331fb03a70349bc804c1b1)

Signed-off-by: Patrick Wendell <pwendell@gmail.com>
[SPARK-1808] Route bin/pyspark through Spark submit

**Problem.** For `bin/pyspark`, there is currently no other way to specify Spark configuration properties other than through `SPARK_JAVA_OPTS` in `conf/spark-env.sh`. However, this mechanism is supposedly deprecated. Instead, it needs to pick up configurations explicitly specified in `conf/spark-defaults.conf`.

**Solution.** Have `bin/pyspark` invoke `bin/spark-submit`, like all of its counterparts in Scala land (i.e. `bin/spark-shell`, `bin/run-example`). This has the additional benefit of making the invocation of all the user facing Spark scripts consistent.

**Details.** `bin/pyspark` inherently handles two cases: (1) running python applications and (2) running the python shell. For (1), Spark submit already handles running python applications. For cases in which `bin/pyspark` is given a python file, we can simply call pass the file directly to Spark submit and let it handle the rest.

For case (2), `bin/pyspark` starts a python process as before, which launches the JVM as a sub-process. The existing code already provides a code path to do this. All we needed to change is to use `bin/spark-submit` instead of `spark-class` to launch the JVM. This requires modifications to Spark submit to handle the pyspark shell as a special case.

This has been tested locally (OSX and Windows 7), on a standalone cluster, and on a YARN cluster. Running IPython also works as before, except now it takes in Spark submit arguments too.

Author: Andrew Or <andrewor14@gmail.com>

Closes #799 from andrewor14/pyspark-submit and squashes the following commits:

bf37e36 [Andrew Or] Minor changes
01066fa [Andrew Or] bin/pyspark for Windows
c8cb3bf [Andrew Or] Handle perverse app names (with escaped quotes)
1866f85 [Andrew Or] Windows is not cooperating
456d844 [Andrew Or] Guard against shlex hanging if PYSPARK_SUBMIT_ARGS is not set
7eebda8 [Andrew Or] Merge branch 'master' of github.com:apache/spark into pyspark-submit
b7ba0d8 [Andrew Or] Address a few comments (minor)
06eb138 [Andrew Or] Use shlex instead of writing our own parser
05879fa [Andrew Or] Merge branch 'master' of github.com:apache/spark into pyspark-submit
a823661 [Andrew Or] Fix --die-on-broken-pipe not propagated properly
6fba412 [Andrew Or] Deal with quotes + address various comments
fe4c8a7 [Andrew Or] Update --help for bin/pyspark
afe47bf [Andrew Or] Fix spark shell
f04aaa4 [Andrew Or] Merge branch 'master' of github.com:apache/spark into pyspark-submit
a371d26 [Andrew Or] Route bin/pyspark through Spark submit
(cherry picked from commit 4b8ec6fcfd7a7ef0857d5b21917183c181301c95)

Signed-off-by: Patrick Wendell <pwendell@gmail.com>
[SPARK-1824] Remove <master> from Python examples

A recent PR (#552) fixed this for all Scala / Java examples. We need to do it for python too.

Note that this blocks on #799, which makes `bin/pyspark` go through Spark submit. With only the changes in this PR, the only way to run these examples is through Spark submit. Once #799 goes in, you can use `bin/pyspark` to run them too. For example,

```
bin/pyspark examples/src/main/python/pi.py 100 --master local-cluster[4,1,512]
```

Author: Andrew Or <andrewor14@gmail.com>

Closes #802 from andrewor14/python-examples and squashes the following commits:

cf50b9f [Andrew Or] De-indent python comments (minor)
50f80b1 [Andrew Or] Remove pyFiles from SparkContext construction
c362f69 [Andrew Or] Update docs to use spark-submit for python applications
7072c6a [Andrew Or] Merge branch 'master' of github.com:apache/spark into python-examples
427a5f0 [Andrew Or] Update docs
d32072c [Andrew Or] Remove <master> from examples + update usages
(cherry picked from commit cf6cbe9f76c3b322a968c836d039fc5b70d4ce43)

Signed-off-by: Patrick Wendell <pwendell@gmail.com>
Make deprecation warning less severe

Just a small change. I think it's good not to scare people who are using the old options.

Author: Patrick Wendell <pwendell@gmail.com>

Closes #810 from pwendell/warnings and squashes the following commits:

cb8a311 [Patrick Wendell] Make deprecation warning less severe
(cherry picked from commit 442808a7482b81c8de887c901b424683da62022e)

Signed-off-by: Patrick Wendell <pwendell@gmail.com>
Revert "[maven-release-plugin] prepare for next development iteration"

This reverts commit e5436b8c1a79ce108f3af402455ac5f6dc5d1eb3.
Revert "[maven-release-plugin] prepare release v1.0.0-rc8"

This reverts commit 80eea0f111c06260ffaa780d2f3f7facd09c17bc.
[maven-release-plugin] prepare release v1.0.0-rc9
[maven-release-plugin] prepare for next development iteration
Fix spark-submit path in spark-shell & pyspark

Author: Neville Li <neville@spotify.com>

Closes #812 from nevillelyh/neville/v1.0 and squashes the following commits:

0dc33ed [Neville Li] Fix spark-submit path in pyspark
becec64 [Neville Li] Fix spark-submit path in spark-shell
SPARK-1873: Add README.md file when making distributions

Author: Patrick Wendell <pwendell@gmail.com>

Closes #818 from pwendell/reamde and squashes the following commits:

4020b11 [Patrick Wendell] SPARK-1873: Add README.md file when making distributions

(cherry picked from commit 4ce479324bdcf603806fc90b5b0f4968c6de690e)
Signed-off-by: Matei Zaharia <matei@databricks.com>
[WIP][SPARK-1871][MLLIB] Improve MLlib guide for v1.0

Some improvements to MLlib guide:

1. [SPARK-1872] Update API links for unidoc.
2. [SPARK-1783] Added `page.displayTitle` to the global layout. If it is defined, use it instead of `page.title` for title display.
3. Add more Java/Python examples.

Author: Xiangrui Meng <meng@databricks.com>

Closes #816 from mengxr/mllib-doc and squashes the following commits:

ec2e407 [Xiangrui Meng] format scala example for ALS
cd9f40b [Xiangrui Meng] add a paragraph to summarize distributed matrix types
4617f04 [Xiangrui Meng] add python example to loadLibSVMFile and fix Java example
d6509c2 [Xiangrui Meng] [SPARK-1783] update mllib titles
561fdc0 [Xiangrui Meng] add a displayTitle option to global layout
195d06f [Xiangrui Meng] add Java example for summary stats and minor fix
9f1ff89 [Xiangrui Meng] update java api links in mllib-basics
7dad18e [Xiangrui Meng] update java api links in NB
3a0f4a6 [Xiangrui Meng] api/pyspark -> api/python
35bdeb9 [Xiangrui Meng] api/mllib -> api/scala
e4afaa8 [Xiangrui Meng] explicity state what might change

(cherry picked from commit df0aa8353ab6d3b19d838c6fa95a93a64948309f)
Signed-off-by: Matei Zaharia <matei@databricks.com>
[SPARK-1876] Windows fixes to deal with latest distribution layout changes

- Look for JARs in the right place
- Launch examples the same way as on Unix
- Load datanucleus JARs if they exist
- Don't attempt to parse local paths as URIs in SparkSubmit, since paths with C:\ are not valid URIs
- Also fixed POM exclusion rules for datanucleus (it wasn't properly excluding it, whereas SBT was)

Author: Matei Zaharia <matei@databricks.com>

Closes #819 from mateiz/win-fixes and squashes the following commits:

d558f96 [Matei Zaharia] Fix comment
228577b [Matei Zaharia] Review comments
d3b71c7 [Matei Zaharia] Properly exclude datanucleus files in Maven assembly
144af84 [Matei Zaharia] Update Windows scripts to match latest binary package layout

(cherry picked from commit 7b70a7071894dd90ea1d0091542b3e13e7ef8d3a)
Signed-off-by: Tathagata Das <tathagata.das1565@gmail.com>
SPARK-1878: Fix the incorrect initialization order

JIRA: https://issues.apache.org/jira/browse/SPARK-1878

Author: zsxwing <zsxwing@gmail.com>

Closes #822 from zsxwing/SPARK-1878 and squashes the following commits:

4a47e27 [zsxwing] SPARK-1878: Fix the incorrect initialization order

(cherry picked from commit 1811ba8ccb580979aa2e12019e6a82805f09ab53)
Signed-off-by: Tathagata Das <tathagata.das1565@gmail.com>
SPARK-1879. Increase MaxPermSize since some of our builds have many classes

See https://issues.apache.org/jira/browse/SPARK-1879 -- builds with Hadoop2 and Hive ran out of PermGen space in spark-shell, when those things added up with the Scala compiler.

Note that users can still override it by setting their own Java options with this change. Their options will come later in the command string than the -XX:MaxPermSize=128m.

Author: Matei Zaharia <matei@databricks.com>

Closes #823 from mateiz/spark-1879 and squashes the following commits:

6bc0ee8 [Matei Zaharia] Increase MaxPermSize to 128m since some of our builds have lots of classes

(cherry picked from commit 5af99d7617ba3b9fbfdb345ef9571b7dd41f45a1)
Signed-off-by: Tathagata Das <tathagata.das1565@gmail.com>
[SPARK-1875]NoClassDefFoundError: StringUtils when building with hadoop 1.x and hive

Author: witgo <witgo@qq.com>

Closes #824 from witgo/SPARK-1875_commons-lang-2.6 and squashes the following commits:

ef7231d [witgo] review commit
ead3c3b [witgo] SPARK-1875:NoClassDefFoundError: StringUtils when building against Hadoop 1

(cherry picked from commit 6a2c5c610c259f62cb12d8cfc18bf59cdb334bb2)
Signed-off-by: Tathagata Das <tathagata.das1565@gmail.com>
SPARK-1689: Spark application should die when removed by Master

scheduler.error() will mask the error if there are active tasks. Being removed is a cataclysmic event for Spark applications, and should probably be treated as such.

Author: Aaron Davidson <aaron@databricks.com>

Closes #832 from aarondav/i-love-u and squashes the following commits:

9f1200f [Aaron Davidson] SPARK-1689: Spark application should die when removed by Master

(cherry picked from commit b0ce22e071da4cc62ec5e29abf7b1299b8e4a6b0)
Signed-off-by: Tathagata Das <tathagata.das1565@gmail.com>
[SPARK-1874][MLLIB] Clean up MLlib sample data

1. Added synthetic datasets for `MovieLensALS`, `LinearRegression`, `BinaryClassification`.
2. Embedded instructions in the help message of those example apps.

Per discussion with Matei on the JIRA page, new example data is under `data/mllib`.

Author: Xiangrui Meng <meng@databricks.com>

Closes #833 from mengxr/mllib-sample-data and squashes the following commits:

59f0a18 [Xiangrui Meng] add sample binary classification data
3c2f92f [Xiangrui Meng] add linear regression data
050f1ca [Xiangrui Meng] add a sample dataset for MovieLensALS example

(cherry picked from commit bcb9dce6f444a977c714117811bce0c54b417650)
Signed-off-by: Tathagata Das <tathagata.das1565@gmail.com>
[Spark 1877] ClassNotFoundException when loading RDD with serialized objects

Updated version of #821

Author: Tathagata Das <tathagata.das1565@gmail.com>
Author: Ghidireac <bogdang@u448a5b0a73d45358d94a.ant.amazon.com>

Closes #835 from tdas/SPARK-1877 and squashes the following commits:

f346f71 [Tathagata Das] Addressed Patrick's comments.
fee0c5d [Ghidireac] SPARK-1877: ClassNotFoundException when loading RDD with serialized objects

(cherry picked from commit 52eb54d02403a3c37d84b9da7cc1cdb261048cf8)
Signed-off-by: Tathagata Das <tathagata.das1565@gmail.com>
Updated CHANGES.txt
Revert "[maven-release-plugin] prepare for next development iteration"

This reverts commit f8e611955096c5c1c7db5764b9d2851b1d295f0d.