Java version checked if Gurobi not linked
Species with form X+[?] such as H+[c] ignored

as suspicious.
iAF1260_anaerobic models saved as sbml after...

running FBA so fluxes will be representative of anaerobic values.
FBA and GDBB log files are cleaned up at startup...

of MOST. Usually cleaned up on Exit action, but if there is a crash or
outage, these files remain.
All exceptions caught in presentation layer
Exceptions caught data layer not ReactionFactory

Will need Resizable Dialog for that since can throw multiple errors.
Removed unnecessary object

only a static method was used