#2560 Looser tolerances needed for parallel.

git-svn-id: https://chaste.cs.ox.ac.uk/svn/chaste/trunk@22069 b5f69653-2bf5-0310-8201-b0dafb8e1405
#2112 improving testing of achiving surface meshes and fixed bug in the loading of these meshes.

git-svn-id: https://chaste.cs.ox.ac.uk/svn/chaste/trunk@22074 b5f69653-2bf5-0310-8201-b0dafb8e1405
#2112 fixing tests by correcting format of  surface mesh and removing an errant assert(0)

git-svn-id: https://chaste.cs.ox.ac.uk/svn/chaste/trunk@22077 b5f69653-2bf5-0310-8201-b0dafb8e1405
#2548 - remove unnecessary input argument from `CheckForSwapsFromShortEdges()` and `IdentifySwapType()`

git-svn-id: https://chaste.cs.ox.ac.uk/svn/chaste/trunk@22078 b5f69653-2bf5-0310-8201-b0dafb8e1405
#2441/#2544 - correct shoddy copy'n'paste doxygen

git-svn-id: https://chaste.cs.ox.ac.uk/svn/chaste/trunk@22079 b5f69653-2bf5-0310-8201-b0dafb8e1405
#2544 - change the name of the class `CellVariablesWriter` to `CellCycleModelProteinConcentrationsWriter`

git-svn-id: https://chaste.cs.ox.ac.uk/svn/chaste/trunk@22081 b5f69653-2bf5-0310-8201-b0dafb8e1405
#2543 - change the name of the class `CellLocationWriter` to `CellLocationIndexWriter`

git-svn-id: https://chaste.cs.ox.ac.uk/svn/chaste/trunk@22082 b5f69653-2bf5-0310-8201-b0dafb8e1405
#2543/#2544 - regenerate archive

git-svn-id: https://chaste.cs.ox.ac.uk/svn/chaste/trunk@22085 b5f69653-2bf5-0310-8201-b0dafb8e1405
#2493 - add data files

git-svn-id: https://chaste.cs.ox.ac.uk/svn/chaste/trunk@22090 b5f69653-2bf5-0310-8201-b0dafb8e1405
#2493 - add method `OutputSimulationModifierParameters()` to simulation modifier class hierarchy

git-svn-id: https://chaste.cs.ox.ac.uk/svn/chaste/trunk@22091 b5f69653-2bf5-0310-8201-b0dafb8e1405
#2566 SVI falls over gracefully in parallel

git-svn-id: https://chaste.cs.ox.ac.uk/svn/chaste/trunk@22094 b5f69653-2bf5-0310-8201-b0dafb8e1405
#2401 - minor efficiency gain in `ElementIncludesPoint()`

git-svn-id: https://chaste.cs.ox.ac.uk/svn/chaste/trunk@22095 b5f69653-2bf5-0310-8201-b0dafb8e1405
#2493 - fix memory testing

git-svn-id: https://chaste.cs.ox.ac.uk/svn/chaste/trunk@22101 b5f69653-2bf5-0310-8201-b0dafb8e1405
These aren't needed, since there is an `H5Dget_space` before every `H5Dwrite`.

git-svn-id: https://chaste.cs.ox.ac.uk/svn/chaste/trunk@22115 b5f69653-2bf5-0310-8201-b0dafb8e1405