nanshe/HDF5_serializers.py: Changed RegionReference handling to use attrs for dataset name and slice.
nanshe/nanshe_learner.py: Store dataset name and slice attrs for RegionReferences.
nanshe/HDF5_serializers.py: In read_numpy_structured_array_from_HDF5, added support for artificial references to datasets or regions in datasets.
nanshe/nanshe_learner.py: In generate_neurons_blocks, switched to using artifical references in place of regionrefs.
nanshe/nanshe_learner.py: Change input file to read only mode.
nanshe/HDF5_serializers.py: Turned off assertion (recheck).
tests/test_advanced_image_processing.py: Fixed some broken tests.
nanshe/advanced_image_processing.py: Changed the percentile filter for a faster one added to VIGRA.